If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ), 'gf_id' => 'HOM05D000633', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000633' ), 'data_identifier' => 'HOM05D000633', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000633', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '897', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p22710' => 'bna', 'A02p18050' => 'bna', 'A03p10200' => 'bna', 'A03p42810' => 'bna', 'A05p26200' => 'bna', 'A06p00560' => 'bna', 'A06p36440' => 'bna', 'A07p26300' => 'bna', 'A07p38720' => 'bna', 'A08p11520' => 'bna', 'A09p06040' => 'bna', 'Aa31LG1G14030' => 'aar', 'Aa31LG4G2840' => 'aar', 'Aa31LG4G60' => 'aar', 'Aa31LG5G9860' => 'aar', 'Aa31LG8G9100' => 'aar', 'Aa31LG9G2480' => 'aar', 'Actinidia04243' => 'ach', 'Actinidia08486' => 'ach', 'Actinidia21704' => 'ach', 'Actinidia21795' => 'ach', 'Actinidia23521' => 'ach', 'Actinidia24720' => 'ach', 'Actinidia26019' => 'ach', 'Ah.01g005720' => 'amhyb', 'Ah.01g021900' => 'amhyb', 'Ah.08g216990' => 'amhyb', 'Ah.13g071600' => 'amhyb', 'Ah.15g095220' => 'amhyb', 'Ah.16g105890' => 'amhyb', 'Ah.16g105910' => 'amhyb', 'AL1G62800' => 'aly', 'AL2G32200' => 'aly', 'AL2G41790' => 'aly', 'AL3G36860' => 'aly', 'AL4G17460' => 'aly', 'AL6G32220' => 'aly', 'AL6G37790' => 'aly', 'AL7G41040' => 'aly', 'Aqoxy2G03412' => 'aox', 'Aqoxy5G00449' => 'aox', 'Aqoxy7G01025' => 'aox', 'Aqoxy7G03889' => 'aox', 'Aqoxy7G03890' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1Z9T80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2X6UKF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0C1TC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY7WV5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LRR3H6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q4PIE3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QI8G0Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VT3Q0W' => 'arhy', 'AT1G54095' => 'ath', 'AT1G72510' => 'ath', 'AT1G79770' => 'ath', 'AT2G09970' => 'ath', 'AT2G25780' => 'ath', 'AT3G22540' => 'ath', 'AT4G14819' => 'ath', 'AT5G20670' => 'ath', 'AT5G25840' => 'ath', 'ATR0598G018' => 'atr', 'ATR0697G220' => 'atr', 'ATR0705G027' => 'atr', 'ATR0705G174' => 'atr', 'ATR0767G211' => 'atr', 'Atru.chr1.3512' => 'acertr', 'Atru.chr1.4040' => 'acertr', 'Atru.chr4.2446' => 'acertr', 'Atru.chr7.1721' => 'acertr', 'Atru.chr7.1829' => 'acertr', 'Atru.chr7.2072' => 'acertr', 'Atru.chr7.2073' => 'acertr', 'Atru.chr7.2074' => 'acertr', 'AUR62001456' => 'cqu', 'AUR62009243' => 'cqu', 'AUR62009910' => 'cqu', 'AUR62022185' => 'cqu', 'AUR62031890' => 'cqu', 'AUR62033679' => 'cqu', 'AUR62034713' => 'cqu', 'AUR62041973' => 'cqu', 'AUR62043770' => 'cqu', 'BcaB01g04774' => 'bca', 'BcaB03g15003' => 'bca', 'BcaB04g19204' => 'bca', 'BcaB04g19205' => 'bca', 'BcaB04g19758' => 'bca', 'BcaB05g22821' => 'bca', 'BcaB05g22822' => 'bca', 'BcaB05g24760' => 'bca', 'BcaB06g26364' => 'bca', 'BcaB08g36517' => 'bca', 'BcaC01g03440' => 'bca', 'BcaC03g13785' => 'bca', 'BcaC03g15396' => 'bca', 'BcaC04g19456' => 'bca', 'BcaC04g23595' => 'bca', 'BcaC05g28038' => 'bca', 'BcaC07g37858' => 'bca', 'BcaC08g43590' => 'bca', 'BcaC08g46703' => 'bca', 'BcaC09g50163' => 'bca', 'BcaNung00327' => 'bca', 'BcaNung00330' => 'bca', 'BNapus_Darmor_BZH_scaffold_38p01410' => 'bna', 'BolC1t02758H' => 'bol', 'BolC2t07057H' => 'bol', 'BolC2t09057H' => 'bol', 'BolC3t13643H' => 'bol', 'BolC3t17527H' => 'bol', 'BolC5t32799H' => 'bol', 'BolC6t36059H' => 'bol', 'BolC6t39729H' => 'bol', 'BolC7t44737H' => 'bol', 'BolC8t48249H' => 'bol', 'BolC9t53587H' => 'bol', 'BolC9t58420H' => 'bol', 'BraA01t02184Z' => 'bra', 'BraA02t06852Z' => 'bra', 'BraA03t10330Z' => 'bra', 'BraA03t13428Z' => 'bra', 'BraA05t21496Z' => 'bra', 'BraA06t23270Z' => 'bra', 'BraA06t26567Z' => 'bra', 'BraA07t30274Z' => 'bra', 'BraA07t31425Z' => 'bra', 'BraA08t33144Z' => 'bra', 'BraA09t36246Z' => 'bra', 'BraA10t44013Z' => 'bra', 'C01p28290' => 'bna', 'C02p30080' => 'bna', 'C03p11720' => 'bna', 'C03p52590' => 'bna', 'C05p40600' => 'bna', 'C06p09880' => 'bna', 'C06p46880' => 'bna', 'C07p42060' => 'bna', 'C09p06630' => 'bna', 'C09p55560' => 'bna', 'CAN.G1094.9' => 'can', 'CAN.G1152.17' => 'can', 'CAN.G1230.13' => 'can', 'CAN.G1349.2' => 'can', 'CAN.G20.28' => 'can', 'CAN.G231.3' => 'can', 'CAN.G2991.1' => 'can', 'CAN.G438.2' => 'can', 'CAN.G825.3' => 'can', 'CAN.G862.49' => 'can', 'CANSAT25G3080' => 'cansat', 'CANSAT56G0138' => 'cansat', 'CANSAT56G1211' => 'cansat', 'CANSAT56G1778' => 'cansat', 'CANSAT64G2139' => 'cansat', 'CANSAT78G2251' => 'cansat', 'CARHR044430' => 'chi', 'CARHR065450' => 'chi', 'CARHR074710' => 'chi', 'CARHR098430' => 'chi', 'CARHR104860' => 'chi', 'CARHR115460' => 'chi', 'CARHR187560' => 'chi', 'CARHR192140' => 'chi', 'CARHR221390' => 'chi', 'Carub.0001s4333' => 'cru', 'Carub.0002s1937' => 'cru', 'Carub.0002s2774' => 'cru', 'Carub.0003s2270' => 'cru', 'Carub.0004s0557' => 'cru', 'Carub.0006s1901' => 'cru', 'Carub.0006s2361' => 'cru', 'Carub.0007s2730' => 'cru', 'Ca_01159_v3' => 'car', 'Ca_09306_v3' => 'car', 'Ca_10887_v3' => 'car', 'Ca_13093_v3' => 'car', 'Ca_15810_v3' => 'car', 'Ca_23246_v3' => 'car', 'Ca_23397_v3' => 'car', 'Cc00_g30810' => 'ccan', 'Cc03_g03940' => 'ccan', 'Cc04_g02670' => 'ccan', 'Cc06_g12280' => 'ccan', 'Cc08_g00990' => 'ccan', 'Cc08_g09780' => 'ccan', 'CDE02G0633' => 'cde', 'CDE05G0408' => 'cde', 'CDE05G2991' => 'cde', 'CDE05G3176' => 'cde', 'CDE06G0735' => 'cde', 'CDE07G0639' => 'cde', 'CDE11G0291' => 'cde', 'Cfa002975' => 'cfa', 'Cfa003521' => 'cfa', 'Cfa003658' => 'cfa', 'Cfa015665' => 'cfa', 'Cfa020650' => 'cfa', 'Ciclev10006253m.g' => 'ccl', 'Ciclev10009620m.g' => 'ccl', 'Ciclev10009800m.g' => 'ccl', 'Ciclev10010477m.g' => 'ccl', 'Ciclev10010820m.g' => 'ccl', 'Ciclev10026283m.g' => 'ccl', 'Ciclev10026666m.g' => 'ccl', 'CiPaw.01G167700' => 'cil', 'CiPaw.01G217100' => 'cil', 'CiPaw.01G232400' => 'cil', 'CiPaw.02G098100' => 'cil', 'CiPaw.02G134800' => 'cil', 'CiPaw.02G146400' => 'cil', 'CiPaw.03G204800' => 'cil', 'CiPaw.04G142400' => 'cil', 'CiPaw.07G203100' => 'cil', 'CiPaw.07G203200' => 'cil', 'CiPaw.15G148600' => 'cil', 'ClCG03G014980' => 'cla', 'ClCG05G015860' => 'cla', 'ClCG06G006280' => 'cla', 'ClCG07G014550' => 'cla', 'ClCG08G012140' => 'cla', 'ClCG09G000110' => 'cla', 'ClCG09G001070' => 'cla', 'ClCG11G015090' => 'cla', 'COL.COLO4_18082' => 'col', 'COL.COLO4_20984' => 'col', 'COL.COLO4_20985' => 'col', 'COL.COLO4_21159' => 'col', 'COL.COLO4_21493' => 'col', 'COL.COLO4_30490' => 'col', 'COL.COLO4_30735' => 'col', 'Cpa.g.c30829.1' => 'cpa', 'Cpa.g.c43223' => 'cpa', 'Cpa.g.sc109.21' => 'cpa', 'Cpa.g.sc3.341' => 'cpa', 'Cpa.g.sc58.89' => 'cpa', 'CsaV3_1G041160' => 'csa', 'CsaV3_2G030760' => 'csa', 'CsaV3_3G013180' => 'csa', 'CsaV3_3G030720' => 'csa', 'CsaV3_3G048490' => 'csa', 'CsaV3_4G036150' => 'csa', 'CsaV3_7G022440' => 'csa', 'CsaV3_7G034350' => 'csa', 'CsaV3_7G035350' => 'csa', 'CSS0003085' => 'camsi', 'CSS0005178' => 'camsi', 'CSS0014978' => 'camsi', 'CSS0018549' => 'camsi', 'CSS0036566' => 'camsi', 'CSS0041855' => 'camsi', 'CSS0042859' => 'camsi', 'DCAR_000758' => 'dca', 'DCAR_004464' => 'dca', 'DCAR_004465' => 'dca', 'DCAR_007650' => 'dca', 'DCAR_016112' => 'dca', 'DCAR_016193' => 'dca', 'DCAR_023075' => 'dca', 'DCAR_024169' => 'dca', 'DCAR_024756' => 'dca', 'DCAR_027226' => 'dca', 'DCAR_030645' => 'dca', 'Dinv14006' => 'din', 'Dinv18784' => 'din', 'Dinv20418' => 'din', 'Dinv27913' => 'din', 'Dinv30446' => 'din', 'Dinv37856' => 'din', 'Dinv37987' => 'din', 'Dinv37988' => 'din', 'Dinv44546' => 'din', 'Duzib150G0005' => 'dzi', 'Duzib150G1017' => 'dzi', 'Duzib150G1054' => 'dzi', 'Duzib150G1617' => 'dzi', 'Duzib151G1022' => 'dzi', 'Duzib160G0745' => 'dzi', 'Duzib168G0476' => 'dzi', 'Duzib168G1002' => 'dzi', 'Duzib168G1531' => 'dzi', 'Duzib168G2023' => 'dzi', 'Duzib187G1440' => 'dzi', 'Duzib192G0234' => 'dzi', 'Duzib192G0367' => 'dzi', 'Duzib212G0519' => 'dzi', 'Duzib235G0787' => 'dzi', 'Duzib235G1020' => 'dzi', 'ECA232G3002' => 'eca', 'ECA232G4056' => 'eca', 'ECA234G0965' => 'eca', 'ECA240G0574' => 'eca', 'ECA247G1216' => 'eca', 'ECA248G1074' => 'eca', 'EL10Ac2g03993' => 'bvu', 'EL10Ac7g16432' => 'bvu', 'EL10Ac9g22096' => 'bvu', 'Eucgr.B01080' => 'egr', 'Eucgr.B03129' => 'egr', 'Eucgr.B03294' => 'egr', 'Eucgr.C00606' => 'egr', 'Eucgr.C00742' => 'egr', 'Eucgr.C02939' => 'egr', 'Eucgr.C03172' => 'egr', 'Eucgr.C03308' => 'egr', 'Eucgr.C03320' => 'egr', 'Eucgr.F03067' => 'egr', 'Eucgr.F04401' => 'egr', 'Eucgr.G01807' => 'egr', 'Eucgr.J02804' => 'egr', 'Eucgr.K01491' => 'egr', 'Eucgr.L03442' => 'egr', 'FAN02G2321' => 'fan', 'FAN02G3095' => 'fan', 'FAN03G2794' => 'fan', 'FAN05G1956' => 'fan', 'FAN05G4714' => 'fan', 'FAN07G2284' => 'fan', 'FAN09G0441' => 'fan', 'FAN09G3747' => 'fan', 'FAN12G1289' => 'fan', 'FAN12G2133' => 'fan', 'FAN12G4085' => 'fan', 'FAN14G2291' => 'fan', 'FAN14G5918' => 'fan', 'FAN15G1566' => 'fan', 'FAN15G1638' => 'fan', 'FAN17G2633' => 'fan', 'FAN19G1744' => 'fan', 'FAN20G0878' => 'fan', 'FAN20G1148' => 'fan', 'FAN20G2086' => 'fan', 'FAN23G2880' => 'fan', 'FAN24G2030' => 'fan', 'FAN26G0621' => 'fan', 'FAN26G2298' => 'fan', 'FAN27G0186' => 'fan', 'FAN27G1767' => 'fan', 'FAN28G1851' => 'fan', 'FvH4_1g08900' => 'fve', 'FvH4_2g30810' => 'fve', 'FvH4_2g35380' => 'fve', 'FvH4_2g35390' => 'fve', 'FvH4_4g16260' => 'fve', 'FvH4_6g32260' => 'fve', 'FvH4_6g35020' => 'fve', 'Glyma.01G237000' => 'gma', 'Glyma.03G051800' => 'gma', 'Glyma.04G057100' => 'gma', 'Glyma.04G085300' => 'gma', 'Glyma.04G085400' => 'gma', 'Glyma.06G057500' => 'gma', 'Glyma.06G086900' => 'gma', 'Glyma.07G016400' => 'gma', 'Glyma.07G040400' => 'gma', 'Glyma.08G201800' => 'gma', 'Glyma.10G247200' => 'gma', 'Glyma.11G006300' => 'gma', 'Glyma.13G111200' => 'gma', 'Glyma.13G355200' => 'gma', 'Glyma.14G106700' => 'gma', 'Glyma.15G019000' => 'gma', 'Glyma.16G009000' => 'gma', 'Glyma.17G048300' => 'gma', 'Glyma.17G219500' => 'gma', 'Glyma.20G147100' => 'gma', 'Gohir.A02G118300' => 'ghi', 'Gohir.A05G034300' => 'ghi', 'Gohir.A05G128700' => 'ghi', 'Gohir.A06G077300' => 'ghi', 'Gohir.A06G092200' => 'ghi', 'Gohir.A06G092300' => 'ghi', 'Gohir.A07G018800' => 'ghi', 'Gohir.A09G216600' => 'ghi', 'Gohir.A10G055500' => 'ghi', 'Gohir.A10G066500' => 'ghi', 'Gohir.A13G188200' => 'ghi', 'Gohir.D03G058900' => 'ghi', 'Gohir.D05G035700' => 'ghi', 'Gohir.D05G133200' => 'ghi', 'Gohir.D06G076300' => 'ghi', 'Gohir.D06G091800' => 'ghi', 'Gohir.D06G091900' => 'ghi', 'Gohir.D07G018600' => 'ghi', 'Gohir.D09G219000' => 'ghi', 'Gohir.D10G057400' => 'ghi', 'Gohir.D10G067780' => 'ghi', 'Gohir.D13G195100' => 'ghi', 'Gorai.001G019300' => 'gra', 'Gorai.003G062800' => 'gra', 'Gorai.006G240000' => 'gra', 'Gorai.009G036300' => 'gra', 'Gorai.009G136900' => 'gra', 'Gorai.010G089300' => 'gra', 'Gorai.010G105700' => 'gra', 'Gorai.010G105800' => 'gra', 'Gorai.011G061500' => 'gra', 'Gorai.011G072300' => 'gra', 'Gorai.013G221200' => 'gra', 'GSVIVG01016733001' => 'vvi', 'GSVIVG01017006001' => 'vvi', 'GSVIVG01017007001' => 'vvi', 'GSVIVG01017009001' => 'vvi', 'GSVIVG01017998001' => 'vvi', 'GSVIVG01035488001' => 'vvi', 'GSVIVG01035609001' => 'vvi', 'HanXRQChr04g0094801' => 'han', 'HanXRQChr04g0108811' => 'han', 'HanXRQChr05g0149961' => 'han', 'HanXRQChr05g0149971' => 'han', 'HanXRQChr09g0275861' => 'han', 'HanXRQChr09g0276801' => 'han', 'HanXRQChr10g0312451' => 'han', 'HanXRQChr11g0329241' => 'han', 'HanXRQChr11g0352411' => 'han', 'HanXRQChr12g0360431' => 'han', 'HanXRQChr16g0501191' => 'han', 'HanXRQChr17g0541911' => 'han', 'Haze_00882' => 'cav', 'Haze_15836' => 'cav', 'Haze_16047' => 'cav', 'Haze_18931' => 'cav', 'Haze_21902' => 'cav', 'Haze_26027' => 'cav', 'Hma1.2p1_0049F.1_g028450' => 'hma', 'Hma1.2p1_0229F.1_g096650' => 'hma', 'Hma1.2p1_0291F.1_g114910' => 'hma', 'Hma1.2p1_0430F.1_g151490' => 'hma', 'Hma1.2p1_0602F.1_g187440' => 'hma', 'Hma1.2p1_0686F.1_g203325' => 'hma', 'Hma1.2p1_0745F.1_g212180' => 'hma', 'Hma1.2p1_0949F.1_g240610' => 'hma', 'Hma1.2p1_2485F.1_g323090' => 'hma', 'HPP92_002380' => 'vpl', 'HPP92_002394' => 'vpl', 'HPP92_007931' => 'vpl', 'HPP92_007953' => 'vpl', 'HPP92_008707' => 'vpl', 'HPP92_008733' => 'vpl', 'HPP92_013022' => 'vpl', 'HPP92_019118' => 'vpl', 'HPP92_023502' => 'vpl', 'HPP92_027608' => 'vpl', 'Hund31029' => 'sun', 'Lalb_Chr02g0140641' => 'lal', 'Lalb_Chr04g0253651' => 'lal', 'Lalb_Chr05g0211031' => 'lal', 'Lalb_Chr07g0181231' => 'lal', 'Lalb_Chr08g0242991' => 'lal', 'Lalb_Chr10g0101431' => 'lal', 'Lalb_Chr13g0299391' => 'lal', 'Lalb_Chr14g0373081' => 'lal', 'Lalb_Chr14g0375471' => 'lal', 'Lalb_Chr16g0389131' => 'lal', 'Lalb_Chr17g0343541' => 'lal', 'Lalb_Chr22g0351511' => 'lal', 'Lalb_Chr24g0393691' => 'lal', 'Lalb_Chr24g0396131' => 'lal', 'Lalb_Chr25g0280121' => 'lal', 'Lj3g0013569' => 'lja', 'Lj3g0017768' => 'lja', 'Lj3g0021496' => 'lja', 'Lj4g0024605' => 'lja', 'Lj4P914T18' => 'lonja', 'Lj5C34T4' => 'lonja', 'Lj5C55T1' => 'lonja', 'Lj5g0016657' => 'lja', 'Lj5g0019673' => 'lja', 'Lj6P606T27' => 'lonja', 'Lj7P699T14' => 'lonja', 'Lj8P571T12' => 'lonja', 'Lj9P533T62' => 'lonja', 'LjContig00408g0017177' => 'lja', 'Lsat_1_v5_gn_1_38421' => 'lsa', 'Lsat_1_v5_gn_1_45900' => 'lsa', 'Lsat_1_v5_gn_4_100101' => 'lsa', 'Lsat_1_v5_gn_4_94381' => 'lsa', 'Lsat_1_v5_gn_5_134981' => 'lsa', 'Lsat_1_v5_gn_5_140120' => 'lsa', 'Lsat_1_v5_gn_6_22740' => 'lsa', 'Lsat_1_v5_gn_7_58100' => 'lsa', 'Manes.03G041300' => 'mes', 'Manes.03G059400' => 'mes', 'Manes.03G059500' => 'mes', 'Manes.03G177000' => 'mes', 'Manes.04G133000' => 'mes', 'Manes.04G146400' => 'mes', 'Manes.11G017400' => 'mes', 'Manes.11G034700' => 'mes', 'Manes.15G029900' => 'mes', 'Manes.16G086900' => 'mes', 'Manes.16G094402' => 'mes', 'Mapoly0111s0010' => 'mpo', 'MBI01_g30451_MAGBIO' => 'mbi', 'MBI04_g06587_MAGBIO' => 'mbi', 'MBI05_g09169_MAGBIO' => 'mbi', 'MBI13_g21699_MAGBIO' => 'mbi', 'MBI13_g35421_MAGBIO' => 'mbi', 'MBI19_g02018_MAGBIO' => 'mbi', 'MBI19_g09928_MAGBIO' => 'mbi', 'MBI19_g32446_MAGBIO' => 'mbi', 'MD02G1094400' => 'mdo', 'MD04G1143800' => 'mdo', 'MD06G1201300' => 'mdo', 'MD07G1114800' => 'mdo', 'MD08G1046000' => 'mdo', 'MD08G1057000' => 'mdo', 'MD08G1112600' => 'mdo', 'MD09G1180300' => 'mdo', 'MD09G1205300' => 'mdo', 'MD13G1195100' => 'mdo', 'MD15G1047800' => 'mdo', 'MD15G1091900' => 'mdo', 'MD15G1092000' => 'mdo', 'MD15G1219300' => 'mdo', 'MD16G1195800' => 'mdo', 'MD17G1165800' => 'mdo', 'MD17G1185200' => 'mdo', 'Medtr1g014930' => 'mtr', 'Medtr1g103550' => 'mtr', 'Medtr2g101140' => 'mtr', 'Medtr3g105340' => 'mtr', 'Medtr3g109860' => 'mtr', 'Medtr4g125010' => 'mtr', 'Medtr4g125030' => 'mtr', 'Medtr5g006430' => 'mtr', 'Medtr8g013990' => 'mtr', 'Medtr8g021190' => 'mtr', 'MELO3C003470.2' => 'cme', 'MELO3C006524.2' => 'cme', 'MELO3C011131.2' => 'cme', 'MELO3C012656.2' => 'cme', 'MELO3C015530.2' => 'cme', 'MELO3C022669.2' => 'cme', 'MELO3C024344.2' => 'cme', 'MELO3C024445.2' => 'cme', 'MELO3C030495.2' => 'cme', 'MELO3C032302.2' => 'cme', 'Migut.A00059' => 'egut', 'Migut.A00194' => 'egut', 'Migut.E01786' => 'egut', 'Migut.G00348' => 'egut', 'Migut.I01091' => 'egut', 'Migut.J01267' => 'egut', 'Migut.N00193' => 'egut', 'Migut.O00961' => 'egut', 'MSTRG.10940' => 'ama', 'MSTRG.21861' => 'ama', 'MSTRG.22540' => 'ama', 'MSTRG.24735' => 'ama', 'MSTRG.25914' => 'ama', 'MSTRG.4037' => 'ama', 'MSTRG.9525' => 'ama', 'MSTRG.9976' => 'ama', 'Nitab4.5_0000109g0250' => 'nta', 'Nitab4.5_0000300g0260' => 'nta', 'Nitab4.5_0000321g0140' => 'nta', 'Nitab4.5_0000559g0050' => 'nta', 'Nitab4.5_0001576g0120' => 'nta', 'Nitab4.5_0001755g0120' => 'nta', 'Nitab4.5_0001920g0070' => 'nta', 'Nitab4.5_0002716g0020' => 'nta', 'Nitab4.5_0002898g0080' => 'nta', 'Nitab4.5_0003059g0010' => 'nta', 'Nitab4.5_0003636g0020' => 'nta', 'Nitab4.5_0004135g0030' => 'nta', 'Nitab4.5_0004787g0010' => 'nta', 'Nitab4.5_0005225g0010' => 'nta', 'Nitab4.5_0006339g0020' => 'nta', 'Nitab4.5_0006460g0020' => 'nta', 'Nitab4.5_0007500g0010' => 'nta', 'Nitab4.5_0007840g0020' => 'nta', 'Nitab4.5_0008118g0030' => 'nta', 'Nn1g02355' => 'nnu', 'Nn1g04626' => 'nnu', 'Nn2g12236' => 'nnu', 'Nn2g12239' => 'nnu', 'Nn4g24528' => 'nnu', 'Nn4g24635' => 'nnu', 'Nn6g34092' => 'nnu', 'Nn6g35301' => 'nnu', 'Nn6g35302' => 'nnu', 'Nn8g38613' => 'nnu', 'Nn8g39107' => 'nnu', 'Nn8g39709' => 'nnu', 'Oeu000397.1' => 'oeu', 'Oeu011617.1' => 'oeu', 'Oeu015254.1' => 'oeu', 'Oeu018024.1' => 'oeu', 'Oeu043639.1' => 'oeu', 'Oeu043889.1' => 'oeu', 'Oeu047076.1' => 'oeu', 'Oeu049779.1' => 'oeu', 'Oeu050603.1' => 'oeu', 'Oeu055919.1' => 'oeu', 'Oeu058573.1' => 'oeu', 'Oeu058574.1' => 'oeu', 'Oeu061170.1' => 'oeu', 'Os01g0199700' => 'osa', 'Os01g0200200' => 'osa', 'Os01g0744700' => 'osa', 'Os01g0745000' => 'osa', 'Os02g0229900' => 'osa', 'Os03g0160300' => 'osa', 'Os03g0180100' => 'osa', 'Os03g0407100' => 'osa', 'Os03g0665700' => 'osa', 'Os03g0746900' => 'osa', 'Os05g0202600' => 'osa', 'Os05g0509800' => 'osa', 'Os06g0199402' => 'osa', 'Os06g0554200' => 'osa', 'Os07g0613800' => 'osa', 'Os10g0422800' => 'osa', 'Peaxi162Scf00038g00204' => 'pax', 'Peaxi162Scf00038g00911' => 'pax', 'Peaxi162Scf00192g00116' => 'pax', 'Peaxi162Scf00207g01421' => 'pax', 'Peaxi162Scf00486g00002' => 'pax', 'Peaxi162Scf00603g00007' => 'pax', 'Peaxi162Scf00654g00042' => 'pax', 'Peaxi162Scf00654g00043' => 'pax', 'PGR031G2369' => 'pgr', 'PGR044G1793' => 'pgr', 'PGR044G1815' => 'pgr', 'PGR102G0140' => 'pgr', 'PGR119G1770' => 'pgr', 'PGR142G2787' => 'pgr', 'PGR142G3255' => 'pgr', 'PGR142G3600' => 'pgr', 'PGSC0003DMG400002530' => 'stu', 'PGSC0003DMG400004480' => 'stu', 'PGSC0003DMG400004543' => 'stu', 'PGSC0003DMG400004892' => 'stu', 'PGSC0003DMG400012993' => 'stu', 'PGSC0003DMG400016345' => 'stu', 'PGSC0003DMG400016499' => 'stu', 'PGSC0003DMG400022897' => 'stu', 'PGSC0003DMG400032274' => 'stu', 'PGSC0003DMG402020473' => 'stu', 'Phvul.001G044700' => 'pvu', 'Phvul.002G044400' => 'pvu', 'Phvul.003G130000' => 'pvu', 'Phvul.005G166800' => 'pvu', 'Phvul.007G058200' => 'pvu', 'Phvul.009G083500' => 'pvu', 'Phvul.009G110700' => 'pvu', 'Phvul.009G110800' => 'pvu', 'Phvul.010G128400' => 'pvu', 'Phvul.010G146100' => 'pvu', 'Potri.001G166900' => 'ptr', 'Potri.001G188700' => 'ptr', 'Potri.003G050200' => 'ptr', 'Potri.003G067800' => 'ptr', 'Potri.006G140600' => 'ptr', 'Potri.006G219100' => 'ptr', 'Potri.006G237300' => 'ptr', 'Potri.008G154500' => 'ptr', 'Potri.010G086000' => 'ptr', 'Potri.012G042000' => 'ptr', 'Potri.015G031700' => 'ptr', 'Potri.018G045600' => 'ptr', 'Pp3c11_5700' => 'ppa', 'Pp3c1_3000' => 'ppa', 'Pp3c2_29750' => 'ppa', 'Pp3c7_22220' => 'ppa', 'Prupe.1G015800' => 'ppe', 'Prupe.1G394900' => 'ppe', 'Prupe.1G402200' => 'ppe', 'Prupe.1G446800' => 'ppe', 'Prupe.1G446900' => 'ppe', 'Prupe.3G038900' => 'ppe', 'Prupe.3G060600' => 'ppe', 'Prupe.7G196600' => 'ppe', 'Psat0s1340g0040' => 'psa', 'Psat4g168360' => 'psa', 'Psat4g209600' => 'psa', 'Psat4g221440' => 'psa', 'Psat5g035040' => 'psa', 'Psat5g296960' => 'psa', 'Psat6g023960' => 'psa', 'Psat7g057680' => 'psa', 'PSO017G3500' => 'pso', 'PSO104G0087' => 'pso', 'PSO135G0055' => 'pso', 'PSO210G2826' => 'pso', 'PSO210G3263' => 'pso', 'PSO210G4044' => 'pso', 'PSO210G5545' => 'pso', 'PSO210G6298' => 'pso', 'PSO421G0018' => 'pso', 'PSO724G1173' => 'pso', 'PSO761G0452' => 'pso', 'PSO832G2979' => 'pso', 'QL05p003972' => 'qlo', 'QL05p020456' => 'qlo', 'QL05p021128' => 'qlo', 'QL06p002061' => 'qlo', 'QL11p001062' => 'qlo', 'QL12p041205' => 'qlo', 'RcHm_v2.0_Chr2g0095361' => 'rch', 'RcHm_v2.0_Chr2g0140141' => 'rch', 'RcHm_v2.0_Chr2g0146181' => 'rch', 'RcHm_v2.0_Chr4g0415821' => 'rch', 'RcHm_v2.0_Chr6g0253361' => 'rch', 'RcHm_v2.0_Chr6g0306521' => 'rch', 'RcHm_v2.0_Chr6g0306531' => 'rch', 'RcHm_v2.0_Chr6g0312041' => 'rch', 'Rhsim02G0026000' => 'rsi', 'Rhsim02G0176300' => 'rsi', 'Rhsim03G0227000' => 'rsi', 'Rhsim04G0201400' => 'rsi', 'Rhsim08G0226700' => 'rsi', 'Rhsim08G0240300' => 'rsi', 'Rhsim11G0188800' => 'rsi', 'RhsimUnG0222800' => 'rsi', 'Sabra01G0126400' => 'sbr', 'Sabra01G0152400' => 'sbr', 'Sabra03G0028500' => 'sbr', 'Sabra03G0039700' => 'sbr', 'Sabra06G0109900' => 'sbr', 'Sabra06G0169000' => 'sbr', 'Sabra06G0185400' => 'sbr', 'Sabra06G0185500' => 'sbr', 'Sabra08G0117800' => 'sbr', 'Sabra10G0057700' => 'sbr', 'Sabra12G0029000' => 'sbr', 'Sabra12G0029200' => 'sbr', 'Sabra18G0044700' => 'sbr', 'SalBow1G0379' => 'sbo', 'SalBow4G0531' => 'sbo', 'SalBow4G0775' => 'sbo', 'SalBow4G2443' => 'sbo', 'SalBow6G0206' => 'sbo', 'SalBow6G3297' => 'sbo', 'SalBow7G3591' => 'sbo', 'Sc12g0009620' => 'sci', 'Sc12g0010700' => 'sci', 'Sc13g0004490' => 'sci', 'Sc13g0006030' => 'sci', 'Sc15g0000540' => 'sci', 'Sc25g0004340' => 'sci', 'Sed0001511' => 'sed', 'Sed0001949' => 'sed', 'Sed0004711' => 'sed', 'Sed0005626' => 'sed', 'Sed0007737' => 'sed', 'Sed0011416' => 'sed', 'Sed0012389' => 'sed', 'Sed0013206' => 'sed', 'Sed0015059' => 'sed', 'Sed0015560' => 'sed', 'Sed0018889' => 'sed', 'Sed0027217' => 'sed', 'SEGI_22797' => 'sgi', 'SEGI_35017' => 'sgi', 'SGA_v2.0_scaffold122G33325' => 'sas', 'SGA_v2.0_scaffold139G35354' => 'sas', 'SGA_v2.0_scaffold169G38719' => 'sas', 'SGA_v2.0_scaffold20G09147' => 'sas', 'SGA_v2.0_scaffold243G44274' => 'sas', 'SGA_v2.0_scaffold269G46282' => 'sas', 'SGA_v2.0_scaffold45G17060' => 'sas', 'SGA_v2.0_scaffold4G02068' => 'sas', 'SGA_v2.0_scaffold71G23898' => 'sas', 'SGA_v2.0_scaffold97G29200' => 'sas', 'SHI00464' => 'shi', 'SHI11069' => 'shi', 'SMO116G0413' => 'smo', 'Solyc01g014710.1' => 'sly', 'Solyc03g078050.2' => 'sly', 'Solyc03g120920.1' => 'sly', 'Solyc03g122300.3' => 'sly', 'Solyc06g054130.1' => 'sly', 'Solyc06g062960.3' => 'sly', 'Solyc06g066110.1' => 'sly', 'Solyc06g066530.1' => 'sly', 'Solyc08g061270.1' => 'sly', 'Solyc08g066450.1' => 'sly', 'Solyc08g066460.3' => 'sly', 'Solyc09g082190.1' => 'sly', 'Sopen03g039750' => 'spe', 'Sopen03g041030' => 'spe', 'Sopen06g019280' => 'spe', 'Sopen06g022410' => 'spe', 'Sopen06g024590' => 'spe', 'Sopen06g024800' => 'spe', 'Sopen08g016680' => 'spe', 'Sopen08g020280' => 'spe', 'Sopen09g031070' => 'spe', 'Sp1g29460' => 'spa', 'Sp1g40540' => 'spa', 'Sp2g21780' => 'spa', 'Sp3g20300' => 'spa', 'Sp4g05530' => 'spa', 'Sp5g27590' => 'spa', 'Sp5g36000' => 'spa', 'Sp6g23820' => 'spa', 'Sp7g12960' => 'spa', 'TAR362G1266' => 'tar', 'TAR365G1223' => 'tar', 'TAR383G0279' => 'tar', 'TAR624G0050' => 'tar', 'TAR624G0135' => 'tar', 'TAR624G0608' => 'tar', 'TAR624G0873' => 'tar', 'TAR626G0369' => 'tar', 'TAR626G0664' => 'tar', 'TAR629G2513' => 'tar', 'TAR633G0562' => 'tar', 'TAR636G0463' => 'tar', 'TAR636G2032' => 'tar', 'TAR636G3142' => 'tar', 'TAR667G0004' => 'tar', 'THA.LOC104799190' => 'tha', 'THA.LOC104803033' => 'tha', 'THA.LOC104803753' => 'tha', 'THA.LOC104808058' => 'tha', 'THA.LOC104808554' => 'tha', 'THA.LOC104810372' => 'tha', 'THA.LOC104810994' => 'tha', 'THA.LOC104812255' => 'tha', 'THA.LOC104813549' => 'tha', 'Thecc.04G234000' => 'tca', 'Thecc.06G098200' => 'tca', 'Thecc.06G122700' => 'tca', 'Thecc.09G046400' => 'tca', 'Thecc.09G046500' => 'tca', 'Thecc.09G065400' => 'tca', 'Thecc.09G075100' => 'tca', 'Thhalv10002249m.g' => 'esa', 'Thhalv10005007m.g' => 'esa', 'Thhalv10011952m.g' => 'esa', 'Thhalv10014909m.g' => 'esa', 'Thhalv10019197m.g' => 'esa', 'Thhalv10019228m.g' => 'esa', 'Thhalv10021807m.g' => 'esa', 'Thhalv10026640m.g' => 'esa', 'TPR.G1464' => 'tpr', 'TPR.G15098' => 'tpr', 'TPR.G16735' => 'tpr', 'TPR.G27626' => 'tpr', 'TPR.G35020' => 'tpr', 'TPR.G3536' => 'tpr', 'TPR.G37225' => 'tpr', 'TPR.G37919' => 'tpr', 'TPR.G38887' => 'tpr', 'TPR.G5470' => 'tpr', 'TWI09G0058' => 'twi', 'TWI14G1215' => 'twi', 'TWI18G0001' => 'twi', 'TWI32G0260' => 'twi', 'TWI34G1849' => 'twi', 'TWI53G0297' => 'twi', 'TWI59G0040' => 'twi', 'TWI60G1069' => 'twi', 'TWI63G1184' => 'twi', 'TWI63G1218' => 'twi', 'TWI63G1776' => 'twi', 'TWI73G0522' => 'twi', 'TWI75G0243' => 'twi', 'unitig_22.g6327' => 'ugi', 'unitig_32.g11559' => 'ugi', 'unitig_52.g17108' => 'ugi', 'unitig_88.g27689' => 'ugi', 'vmacro15350' => 'vma', 'vmacro18860' => 'vma', 'vmacro22029' => 'vma', 'VMungo0251G3134' => 'vmu', 'VMungo0331G1059' => 'vmu', 'VMungo0331G1600' => 'vmu', 'VMungo0647G0141' => 'vmu', 'VMungo0720G0742' => 'vmu', 'VMungo1080G0476' => 'vmu', 'VMungo1215G1242' => 'vmu', 'VMungo1215G2010' => 'vmu', 'VMungo1309G0267' => 'vmu', 'VMungo1309G1046' => 'vmu', 'VMungo1309G2679' => 'vmu', 'Zm00001eb004530' => 'zma', 'Zm00001eb005940' => 'zma', 'Zm00001eb047880' => 'zma', 'Zm00001eb057080' => 'zma', 'Zm00001eb120530' => 'zma', 'Zm00001eb120540' => 'zma', 'Zm00001eb120580' => 'zma', 'Zm00001eb214980' => 'zma', 'Zm00001eb217840' => 'zma', 'Zm00001eb239490' => 'zma', 'Zm00001eb277570' => 'zma', 'Zm00001eb284770' => 'zma', 'Zm00001eb292400' => 'zma', 'Zm00001eb327390' => 'zma', 'Zm00001eb353490' => 'zma', 'Zm00001eb373920' => 'zma', 'Zm00001eb384700' => 'zma', 'Zm00001eb401810' => 'zma' ) $gf_id = 'HOM05D000633' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000633' ) $data_identifier = 'HOM05D000633' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 6, 'ach' => (int) 7, 'amhyb' => (int) 7, 'aly' => (int) 8, 'aox' => (int) 5, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 5, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 11, 'cla' => (int) 8, 'col' => (int) 7, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 7, 'dca' => (int) 11, 'din' => (int) 9, 'dzi' => (int) 16, 'eca' => (int) 6, 'bvu' => (int) 3, 'egr' => (int) 15, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 7, 'han' => (int) 12, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 10, 'sun' => (int) 1, 'lal' => (int) 15, 'lja' => (int) 7, 'lonja' => (int) 7, 'lsa' => (int) 8, 'mes' => (int) 11, 'mpo' => (int) 1, 'mbi' => (int) 8, 'mdo' => (int) 17, 'mtr' => (int) 10, 'cme' => (int) 10, 'egut' => (int) 8, 'ama' => (int) 8, 'nta' => (int) 19, 'nnu' => (int) 12, 'oeu' => (int) 13, 'osa' => (int) 16, 'pax' => (int) 8, 'pgr' => (int) 8, 'stu' => (int) 10, 'pvu' => (int) 10, 'ptr' => (int) 12, 'ppa' => (int) 4, 'ppe' => (int) 8, 'psa' => (int) 8, 'pso' => (int) 12, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 2, 'sas' => (int) 10, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 12, 'spe' => (int) 9, 'spa' => (int) 9, 'tar' => (int) 15, 'tha' => (int) 9, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 10, 'twi' => (int) 13, 'ugi' => (int) 4, 'vma' => (int) 3, 'vmu' => (int) 11, 'zma' => (int) 18 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb401810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1